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mv /etc/pentaho/reports/i18n/org $TOMCAT_HOME/webapps/pentaho/WEB-INF/classes
rm -rf /etc/pentaho/reports/CDFReportingTemplate
rmdir /etc/pentaho/reports/i18n
rmdir /etc/pentaho/reports
chown -R tomcat6 $TOMCAT_HOME/webapps

John W  I think instead of the above the following is correct:

unzip -j -d /etc/pentaho/system/pentaho-cdf mifos_bi-1.2.0.zip mifos_bi-1.2.0/reports/CDFReportingTemplate/template-dashboard-mifosreports.html
unzip -j -d /etc/pentaho/system/pentaho-cdf mifos_bi-1.2.0.zip mifos_bi-1.2.0/DashboardsTemplate/template-dashboard-dashboards.html
unzip -j -d /etc/pentaho/system/pentaho-cdf/resources/style/images mifos_bi-1.2.0.zip mifos_bi-1.2.0/reports/CDFReportingTemplate/*.jpg
unzip -d /etc/pentaho mifos_bi-1.2.0.zip mifos_bi-1.2.0/reports/*.*
mv /etc/pentaho/mifos_bi-1.2.0/reports/Dashboards /etc/pentaho
mv /etc/pentaho/mifos_bi-1.2.0/reports/DashboardsMenu /etc/pentaho
mv /etc/pentaho/mifos_bi-1.2.0/reports/standardReports /etc/pentaho

mv /etc/pentaho/mifos_bi-1.2.0/reports/commonActions /etc/pentaho
mv /etc/pentaho/mifos_bi-1.2.0/reports/mpesa /etc/pentaho

mv /etc/pentaho/mifos_bi-1.2.0/reports/dataAccess /etc/pentaho
mv /etc/pentaho/mifos_bi-1.2.0/reports/i18n/org $TOMCAT_HOME/webapps/pentaho/WEB-INF/classesrm -r  /etc/pentaho/mifos_bi-1.2.0
chown -R tomcat6 $TOMCAT_HOME/webapps

Configure Pentaho BI database parameters

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